In this page, you can find the link to the programs we use, and the codes we develop in-home.
Quantum Espresso: an electronic-structure code, based on DFT and TDDFT.
Yambo: an excited state – electronic structure code, based on MBPT and TDDFT.
NAMD: a molecular dynamics code
LAMMPS: a molecular dynamics code
NEURON: a simulation tool to model neurons and networks of neurons.
Neuron models in ModelDB:
AWCon C.elegans
RMD C.elegans
AIY, RIM, AVA interneurons C. elegans
VA, VB, VD motor neurons C. elegans
